MolNFT v1 · #141242 · protein
Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg - D242A mutant
5Z0Z · Pilus assembly protein: “Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg - D242A mutant”. X-ray diffraction, 2 pockets (best druggability 0.70). MolNFT v1 #141242 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5Z0Z
- Type
- protein
- Length
- 895 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilus assembly protein
- UniProt
- A0A179XFF5
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pilus assembly protein | protein | 445 | 11% helix, 43% strand | A0A179XFF5 |
| B | Pilus assembly protein | protein | 450 | 10% helix, 43% strand | A0A179XFF5 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 753 | 0.70 | 0.77 | 66 | empty |
| 2 | 539 | 0.66 | 0.77 | 55 | empty |
Modifications
Observed in the structure: 4 isopeptide (isopeptide).
Compared structures
- 5Z0Z · Crystal structure of shaft pilin spaD from Lactobacillus rhamnosus GG - D242A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A179XFF5
- Elsewhere: RCSB PDB 5Z0Z · PDBe 5Z0Z · UniProt A0A179XFF5
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