MolNFT v1 · #141156 · protein
Crystal structure of asqi with zn
5YY2 · Uncharacterized protein asqi: “Crystal structure of asqi with zn”. X-ray diffraction, 1 ligand (ZN), 10 pockets (best druggability 0.76). MolNFT v1 #141156 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YY2
- Type
- protein
- Length
- 569 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein asqi
- UniProt
- C8VJQ3
- Ligands
- ZN
- Pockets
- 10 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein asqi | protein | 569 | 34% helix, 17% strand | C8VJQ3 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.76 | 0.96 | 23 | empty |
| 2 | 474 | 0.75 | 0.83 | 58 | empty |
| 3 | 73 | 0.75 | 0.99 | 20 | empty |
| 4 | 152 | 0.67 | 0.87 | 22 | empty |
| 5 | 233 | 0.63 | 0.82 | 36 | empty |
Compared structures
- 5YY2 · Crystal structure of AsqI with Zn · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8VJQ3
- Elsewhere: RCSB PDB 5YY2 · PDBe 5YY2 · UniProt C8VJQ3
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