MolNFT v1 · #141127 · protein

Aid-sun tandem of SUN1

5YWZ · Sun domain-containing protein 1: “Aid-sun tandem of SUN1”. X-ray diffraction, 3 pockets (best druggability 0.56). MolNFT v1 #141127 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YWZ
Type: protein
Length: 242 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sun domain-containing protein 1
UniProt: Q9D666
Pockets: 3 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sun domain-containing protein 1	protein	242	26% helix, 32% strand	Q9D666

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.56	0.80	27	empty
2	84	0.52	0.84	22	empty
3	54	0.30	0.75	12	empty

Compared structures

5YWZ · AID-SUN tandem of SUN1 · the same entry in another collection · chain A against A, TM-score 1.00
Q9D666 · AlphaFold monomer V2.0 prediction for sun domain-containing protein 1 (Q9D666) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9D666
Elsewhere: RCSB PDB 5YWZ · PDBe 5YWZ · UniProt Q9D666

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