MolNFT v1 · #14110 · protein
Crystal structure of pcoc, a methionine rich copper resistance protein from escherichia COLI
1LYQ · Pcoc copper resistance protein: “Crystal structure of pcoc, a methionine rich copper resistance protein from escherichia COLI”. X-ray diffraction, 1 pocket (best druggability 0.66). MolNFT v1 #14110 on GenesisL1: 3D structure…
- PDB
- 1LYQ
- Type
- protein
- Length
- 205 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pcoc copper resistance protein
- UniProt
- Q47454
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pcoc copper resistance protein | protein | 101 | 3% helix, 51% strand | Q47454 |
| B | Pcoc copper resistance protein | protein | 104 | 3% helix, 50% strand | Q47454 |
Ligands and binding sites
- GOL · Glycerol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 318 | 0.66 | 0.81 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 335 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1LYQ · Crystal Structure of PcoC, a Methionine Rich Copper Resistance Protein from Escherichia… · the same entry in another collection · chain A against A, TM-score 1.00
- Q47454 · AlphaFold monomer V2.0 prediction for copper resistance protein C (Q47454) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47454
- Elsewhere: RCSB PDB 1LYQ · PDBe 1LYQ · UniProt Q47454
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