MolNFT v1 · #141084 · protein

Complex of mu phage tail fiber and its chaperone

5YVQ · Tail fiber protein S: “Complex of mu phage tail fiber and its chaperone”. X-ray diffraction, 4 pockets (best druggability 0.49). MolNFT v1 #141084 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YVQ
Type: protein
Length: 461 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tail fiber protein S; Tail fiber assembly protein U
UniProt: Q9T1V0, Q9T1U9
Pockets: 4 · best druggability 0.49

Structure

x-ray diffraction · 2 distinct chains · 13% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tail fiber protein S	protein	358	11% helix, 35% strand	Q9T1V0
B	Tail fiber assembly protein U	protein	103	23% helix, 28% strand	Q9T1U9

Ligands and binding sites

GOL · Glycerol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.49	0.83	27	empty
2	56	0.31	0.76	14	empty
3	73	0.29	0.73	20	empty
4	71	0.29	0.73	17	empty

Interfaces

1 interface between chains.

A–B · 847 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

5YVQ · Complex of Mu phage tail fiber and its chaperone · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9T1V0
Every structure of UniProt Q9T1U9
Elsewhere: RCSB PDB 5YVQ · PDBe 5YVQ · UniProt Q9T1V0 · UniProt Q9T1U9

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