MolNFT v1 · #141080 · protein
Crystal structure of the archaeal halo-thermophilic red sea brine pool alcohol dehydrogenase ADH/D1 bound to nzq
5YVM: “Crystal structure of the archaeal halo-thermophilic red sea brine pool alcohol dehydrogenase ADH/D1 bound to…”. X-ray diffraction, 2 ligands (NZQ, MN), 2 pockets (best druggability 0.76). MolNFT v1 #141080 on GenesisL1: 3D…
- PDB
- 5YVM
- Type
- protein
- Length
- 403 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alcohol dehydrogenase
- UniProt
- A0A133UP32
- Ligands
- NZQ, MN
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alcohol dehydrogenase | protein | 403 | 56% helix, 10% strand | A0A133UP32 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 645 | 0.76 | 0.82 | 80 | NZQ |
| 2 | 62 | 0.32 | 0.76 | 15 | empty |
Compared structures
- 5YVM · Crystal Structure of the archaeal halo-thermophilic Red Sea brine pool alcohol… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A133UP32
- Elsewhere: RCSB PDB 5YVM · PDBe 5YVM · UniProt A0A133UP32
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.