MolNFT v1 · #141001 · protein
Crystal structure of H5 hemagglutinin G228S mutant from A/CHICKEN/TAIWAN/0502/2012
5YT9: “Crystal structure of H5 hemagglutinin G228S mutant from A/CHICKEN/TAIWAN/0502/2012”. X-ray diffraction, 1 ligand (NAG), 3 pockets (best druggability 0.55). MolNFT v1 #141001 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5YT9
- Type
- protein
- Length
- 495 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemagglutinin
- Ligands
- NAG
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemagglutinin | protein | 495 | 24% helix, 29% strand | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.55 | 0.77 | 42 | empty |
| 2 | 95 | 0.32 | 0.73 | 21 | empty |
| 3 | 63 | 0.32 | 0.75 | 18 | empty |
Modifications
Observed in the structure: 5 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 5YT9 · Crystal structure of H5 hemagglutinin G228S mutant from A/chicken/Taiwan/0502/2012 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YT9 · PDBe 5YT9
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