MolNFT v1 · #140983 · protein
Pyrophosphate-dependent kinase in the ribokinase family complexed with a pyrophosphate analog and myo-inositol
5YSP: “Pyrophosphate-dependent kinase in the ribokinase family complexed with a pyrophosphate analog and myo-inositol”. X-ray diffraction, 4 ligands (INS, MDN, MG). MolNFT v1 #140983 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5YSP
- Type
- protein
- Length
- 549 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9WYP6
- Ligands
- INS, MDN, MG, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 274 | — | Q9WYP6 |
| B | — | protein | 275 | — | Q9WYP6 |
Ligands and binding sites
- INS · 1,2,3,4,5,6-hexahydroxy-cyclohexane · ligand · 2 copies · chains A, B
- MDN · Methylenediphosphonic acid · ligand · chains A
- MG · Magnesium ion · metal · chains A
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YSP · Pyrophosphate-dependent kinase in the ribokinase family complexed with a pyrophosphate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WYP6
- Elsewhere: RCSB PDB 5YSP · PDBe 5YSP · UniProt Q9WYP6
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