MolNFT v1 · #140980 · protein

Crystal structure analysis of RIF16

5YSM · Cytochrome P450: “Crystal structure analysis of RIF16”. X-ray diffraction, 1 ligand (HEM), 3 pockets (best druggability 0.79). MolNFT v1 #140980 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YSM
Type: protein
Length: 364 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome P450
UniProt: A0A0H3CVZ6
Ligands: HEM
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome P450	protein	364	52% helix, 10% strand	A0A0H3CVZ6

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	733	0.79	0.83	71	HEM
2	80	0.38	0.77	18	empty
3	51	0.28	0.75	13	empty

Compared structures

5YSM · Crystal Structure Analysis of Rif16 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3CVZ6
Elsewhere: RCSB PDB 5YSM · PDBe 5YSM · UniProt A0A0H3CVZ6

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