MolNFT v1 · #140936 · protein
Crystal structure of oxidized cypovirus polyhedra R13A/E73C/Y83C/S193C/A194C mutant
5YRB · Polyhedrin: “Crystal structure of oxidized cypovirus polyhedra R13A/E73C/Y83C/S193C/A194C mutant”. X-ray diffraction, 2 pockets (best druggability 0.53). MolNFT v1 #140936 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5YRB
- Type
- protein
- Length
- 236 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyhedrin
- UniProt
- P11041
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyhedrin | protein | 236 | 26% helix, 31% strand | P11041 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 155 | 0.53 | 0.80 | 22 | EDO |
| 2 | 62 | 0.30 | 0.75 | 16 | empty |
Compared structures
- 5YRB · Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11041
- Elsewhere: RCSB PDB 5YRB · PDBe 5YRB · UniProt P11041
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