MolNFT v1 · #140927 · protein

Crystal structure of cypovirus polyhedra R13A/E73C/Y83C/S193C/A194C mutant

5YR1 · Polyhedrin: “Crystal structure of cypovirus polyhedra R13A/E73C/Y83C/S193C/A194C mutant”. X-ray diffraction, 2 pockets (best druggability 0.54). MolNFT v1 #140927 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YR1
Type: protein
Length: 238 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyhedrin
UniProt: P11041
Pockets: 2 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyhedrin	protein	238	24% helix, 32% strand	P11041

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	155	0.54	0.80	22	EDO
2	61	0.30	0.75	14	empty

Compared structures

5YR1 · Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11041
Elsewhere: RCSB PDB 5YR1 · PDBe 5YR1 · UniProt P11041

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