MolNFT v1 · #140796 · protein
Crystal structure of the deamidase from legionella pneumophila
5YM9 · Uncharacterized protein: “Crystal structure of the deamidase from legionella pneumophila”. X-ray diffraction, 11 pockets (best druggability 0.61). MolNFT v1 #140796 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YM9
- Type
- protein
- Length
- 768 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q5ZTL3
- Pockets
- 11 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein | protein | 384 | 50% helix, 14% strand | Q5ZTL3 |
Pockets
11 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 297 | 0.61 | 0.79 | 36 | empty |
| 2 | 283 | 0.61 | 0.79 | 33 | empty |
| 3 | 405 | 0.60 | 0.76 | 32 | empty |
| 4 | 53 | 0.34 | 0.78 | 13 | empty |
| 5 | 53 | 0.33 | 0.77 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 553 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5YM9 · Crystal Structure of the Deamidase from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZTL3
- Elsewhere: RCSB PDB 5YM9 · PDBe 5YM9 · UniProt Q5ZTL3
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