MolNFT v1 · #140792 · protein

CYP76AH1-4PI from salvia miltiorrhiza

5YM3: “CYP76AH1-4PI from salvia miltiorrhiza”. X-ray diffraction, 3 ligands (HEM, PIM, MN). MolNFT v1 #140792 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YM3
Type: protein
Length: 466 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: S4UX02
Ligands: HEM, PIM, MN

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	466	—	S4UX02

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
PIM · 4-phenyl-1H-imidazole · ligand · chains A
MN · Manganese (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YM3 · CYP76AH1-4pi from salvia miltiorrhiza · the same entry in another collection · chain A against A, TM-score 1.00
S4UX02 · AlphaFold monomer V2.0 prediction for ferruginol synthase (S4UX02) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt S4UX02
Elsewhere: RCSB PDB 5YM3 · PDBe 5YM3 · UniProt S4UX02

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