MolNFT v1 · #14079 · protein
X-ray structure of YBL001C northeast structural genomics (nesg) consortium target YTYST72
1LXJ · Hypothetical 11.5KDA protein in HTB2-NTH2 intergenic region: “X-ray structure of YBL001C northeast structural genomics (nesg) consortium target YTYST72”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.34). MolNFT…
- PDB
- 1LXJ
- Type
- protein
- Length
- 104 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical 11.5KDA protein in HTB2-NTH2 intergenic region
- UniProt
- P35195
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical 11.5KDA protein in HTB2-NTH2 intergenic region | protein | 104 | 39% helix, 31% strand | P35195 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.34 | 0.75 | 19 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 1LXJ · X-RAY STRUCTURE OF YBL001c NORTHEAST STRUCTURAL GENOMICS (NESG) CONSORTIUM TARGET YTYst72 · the same entry in another collection · chain A against A, TM-score 1.00
- P35195 · AlphaFold monomer V2.0 prediction for UPF0045 protein ECM15 (P35195) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35195
- Elsewhere: RCSB PDB 1LXJ · PDBe 1LXJ · UniProt P35195
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