MolNFT v1 · #140766 · protein
Crystal structure of OFD2 in complex with 2OG from schizosaccharomyces pombe
5YL6: “Crystal structure of OFD2 in complex with 2OG from schizosaccharomyces pombe”. X-ray diffraction, 2 ligands (AKG, FE). MolNFT v1 #140766 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YL6
- Type
- protein
- Length
- 184 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UT12
- Ligands
- AKG, FE
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 184 | — | Q9UT12 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · chains A
- FE · Fe (III) ion · metal · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YL6 · Crystal structure of Ofd2 in complex with 2OG from Schizosaccharomyces pombe · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UT12 · AlphaFold monomer V2.0 prediction for uncharacterized protein P8A3.02C (Q9UT12) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UT12
- Elsewhere: RCSB PDB 5YL6 · PDBe 5YL6 · UniProt Q9UT12
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