MolNFT v1 · #140763 · protein
Crystal structure of horse heart myoglobin reconstituted with manganese porphycene in resting state at pH 8.5
5YL3: “Crystal structure of horse heart myoglobin reconstituted with manganese porphycene in resting state at pH 8.5”. X-ray diffraction, 2 ligands (HNN, SO4), 1 pocket (best druggability 0.74). MolNFT v1 #140763 on GenesisL1: 3D…
- PDB
- 5YL3
- Type
- protein
- Length
- 151 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myoglobin
- UniProt
- P68082
- Ligands
- HNN, SO4
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 151 | 76% helix, 0% strand | P68082 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 260 | 0.74 | 0.87 | 29 | HNN |
Compared structures
- 5YL3 · Crystal structure of horse heart myoglobin reconstituted with manganese porphycene in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68082
- Elsewhere: RCSB PDB 5YL3 · PDBe 5YL3 · UniProt P68082
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