MolNFT v1 · #140742 · protein

Crystal structure of the engineered nine-repeat puf domain

5YKH · Pumilio homolog 1: “Crystal structure of the engineered nine-repeat puf domain”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #140742 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YKH
Type: protein
Length: 380 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pumilio homolog 1
UniProt: Q14671
Ligands: PO4

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pumilio homolog 1	protein	380	73% helix, 0% strand	Q14671

Ligands and binding sites

PO4 · Phosphate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YKH · Crystal structure of the engineered nine-repeat PUF domain · the same entry in another collection · chain A against A, TM-score 1.00
Q14671 · AlphaFold monomer V2.0 prediction for pumilio homolog 1 (Q14671) · a predicted model of the same protein · chain A against A, TM-score 0.79

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q14671
Elsewhere: RCSB PDB 5YKH · PDBe 5YKH · UniProt Q14671

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