MolNFT v1 · #140725 · protein
The native crystal structure of RV3197 from mycobacterium tuberculosis
5YJZ · Probable conserved ATP-binding protein ABC transporter: “The native crystal structure of RV3197 from mycobacterium tuberculosis”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.75). MolNFT v1 #140725 on GenesisL1…
- PDB
- 5YJZ
- Type
- protein
- Length
- 400 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable conserved ATP-binding protein ABC transporter
- UniProt
- O53343
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable conserved ATP-binding protein ABC transporter | protein | 400 | 56% helix, 13% strand | O53343 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 312 | 0.75 | 0.87 | 41 | empty |
| 2 | 309 | 0.63 | 0.80 | 39 | empty |
| 3 | 210 | 0.47 | 0.74 | 21 | empty |
| 4 | 50 | 0.28 | 0.75 | 12 | empty |
Compared structures
- 5YJZ · The native crystal structure of Rv3197 from Mycobacterium tuberculosis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O53343
- Elsewhere: RCSB PDB 5YJZ · PDBe 5YJZ · UniProt O53343
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