MolNFT v1 · #140718 · protein
Human chymase in complex with 7-oxo-3-(phenoxyimino)-1,4-diazepane derivative
5YJM: “Human chymase in complex with 7-oxo-3-(phenoxyimino)-1,4-diazepane derivative”. X-ray diffraction, 3 ligands (8W3, NAG, ZN). MolNFT v1 #140718 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YJM
- Type
- protein
- Length
- 218 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- 8W3, NAG, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 218 | — | — |
Ligands and binding sites
- 8W3 · 2-amino-4-((R)-1-((R,Z)-6-(5-chloro-2-methoxybenzyl)-7-oxo-3-(phenoxyimino)-1,4-diazepane-1-carboxamido) propyl)benzoic acid · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YJM · Human chymase in complex with 7-oxo-3-(phenoxyimino)-1,4-diazepane derivative · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YJM · PDBe 5YJM
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