MolNFT v1 · #140708 · protein
Structural insights into the CRISPR-CAS-associated ribonuclease activity of staphylococcus epidermidis CSM6
5YJC: “Structural insights into the CRISPR-CAS-associated ribonuclease activity of staphylococcus epidermidis CSM6”. X-ray diffraction, 3 pockets (best druggability 0.83). MolNFT v1 #140708 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5YJC
- Type
- protein
- Length
- 494 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CSM6
- UniProt
- Q5HK94
- Pockets
- 3 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CSM6 | protein | 247 | 70% helix, 3% strand | Q5HK94 |
| B | CSM6 | protein | 247 | 68% helix, 4% strand | Q5HK94 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1078 | 0.83 | 0.84 | 94 | empty |
| 2 | 138 | 0.79 | 0.97 | 25 | empty |
| 3 | 53 | 0.26 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2296 Ų buried · 37 hydrogen bonds · protein-protein
Compared structures
- 5YJC · Structural insights into the CRISPR-Cas-associated ribonuclease activity of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5HK94
- Elsewhere: RCSB PDB 5YJC · PDBe 5YJC · UniProt Q5HK94
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