MolNFT v1 · #140692 · protein + DNA
Caulobacter crescentus gcra DNA-binding domain (dbd) in complex with methylated dsdna (crystal form 2)
5YIW: “Caulobacter crescentus gcra DNA-binding domain (dbd) in complex with methylated dsdna (crystal form 2)”. X-ray diffraction. MolNFT v1 #140692 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YIW
- Type
- protein + DNA
- Length
- 156 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0H3C9J4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 45 | — | A0A0H3C9J4 |
| D | — | dna | 11 | — | — |
| E | — | dna | 10 | — | — |
Ligands and binding sites
- BU3 · (R,R)-2,3-butanediol · additive · chains D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YIW · Caulobacter crescentus GcrA DNA-binding domain (DBD) in complex with methylated dsDNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3C9J4
- Elsewhere: RCSB PDB 5YIW · PDBe 5YIW · UniProt A0A0H3C9J4
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