MolNFT v1 · #140666 · protein

CRISPR associated protein CAS6

5YI6: “CRISPR associated protein CAS6”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #140666 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YI6
Type: protein
Length: 961 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q57820
Ligands: PO4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	—	protein	241	—	Q57820
B	—	protein	239	—	Q57820
D	—	protein	240	—	Q57820

Ligands and binding sites

PO4 · Phosphate ion · ion · 26 copies · chains A, B, C, D
GOL · Glycerol · additive · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YI6 · CRISPR associated protein Cas6 · the same entry in another collection · chain D against D, TM-score 1.00
Q57820 · AlphaFold monomer V2.0 prediction for CRISPR-associated endoribonuclease CAS6 1 (Q57820) · a predicted model of the same protein · chain D against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q57820
Elsewhere: RCSB PDB 5YI6 · PDBe 5YI6 · UniProt Q57820

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