MolNFT v1 · #140663 · protein + DNA
Structure of lactococcus lactis zitr, C30S mutant in complex with DNA
5YI3: “Structure of lactococcus lactis zitr, C30S mutant in complex with DNA”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #140663 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YI3
- Type
- protein + DNA
- Length
- 1,286 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9CDU5
- Ligands
- ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 146 | — | Q9CDU5 |
| B, M, N | — | protein | 144 | — | Q9CDU5 |
| C, G, K, O, P, L, H, D | — | dna | 16 | — | — |
| E, F, I, J | — | protein | 145 | — | Q9CDU5 |
Ligands and binding sites
- ZN · Zinc ion · metal · 8 copies · chains A, B, E, F, I, J, M, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YI3 · Structure of Lactococcus lactis ZitR, C30S mutant in complex with DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CDU5
- Elsewhere: RCSB PDB 5YI3 · PDBe 5YI3 · UniProt Q9CDU5
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