MolNFT v1 · #140637 · protein
Crystal structure of PD(ALLYL)/WILD type polyhedra
5YHA: “Crystal structure of PD(ALLYL)/WILD type polyhedra”. X-ray diffraction, 4 ligands (PLL, ACE, PD). MolNFT v1 #140637 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YHA
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P11041
- Ligands
- PLL, ACE, PD, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 247 | — | P11041 |
Ligands and binding sites
- PLL · Palladium(II) allyl complex · ligand · 3 copies · chains A
- ACE · Acetyl group · ligand · chains A
- PD · Palladium ion · metal · 5 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YHA · Crystal structure of Pd(allyl)/Wild Type Polyhedra · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11041
- Elsewhere: RCSB PDB 5YHA · PDBe 5YHA · UniProt P11041
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