MolNFT v1 · #140624 · protein
Human TNFRSF25 death domain
5YGS: “Human TNFRSF25 death domain”. X-ray diffraction, 2 ligands (GLC, SO4). MolNFT v1 #140624 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YGS
- Type
- protein
- Length
- 1,827 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- GLC, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 456 | — | — |
| B | — | protein | 456 | — | — |
| C | — | protein | 457 | — | — |
| D | — | protein | 458 | — | — |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 12 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 20 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YGS · Human TNFRSF25 death domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YGS · PDBe 5YGS
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.