MolNFT v1 · #140610 · protein

Crystal structure of drosophila melanogaster papi extended tudor domain mutant - D287A

5YGB · GH18329P: “Crystal structure of drosophila melanogaster papi extended tudor domain mutant - D287A”. X-ray diffraction, 3 pockets (best druggability 0.47). MolNFT v1 #140610 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5YGB
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GH18329P
UniProt: Q9VQ91
Pockets: 3 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GH18329P	protein	213	22% helix, 36% strand	Q9VQ91

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	106	0.47	0.79	17	empty
2	131	0.44	0.76	28	empty
3	86	0.39	0.77	15	empty

Compared structures

5YGB · Crystal structure of drosophila melanogaster Papi extended Tudor domain mutant - D287A · the same entry in another collection · chain A against A, TM-score 1.00
Q9VQ91 · AlphaFold monomer V2.0 prediction for tudor and kh domain-containing protein homolog… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VQ91
Elsewhere: RCSB PDB 5YGB · PDBe 5YGB · UniProt Q9VQ91

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