MolNFT v1 · #140587 · protein

X-ray structure of a mutant form C232S of clostridium perfringens sortase B

5YFK · Uncharacterized protein sortase B: “X-ray structure of a mutant form C232S of clostridium perfringens sortase B”. X-ray diffraction, 1 pocket (best druggability 0.46). MolNFT v1 #140587 on GenesisL1: 3D structure, binding sites and…

PDB: 5YFK
Type: protein
Length: 211 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein sortase B
UniProt: Q8XN25
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein sortase B	protein	211	29% helix, 29% strand	Q8XN25

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	149	0.46	0.77	18	empty

Compared structures

5YFK · X-ray structure of a mutant form C232S of Clostridium perfringens sortase B · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8XN25
Elsewhere: RCSB PDB 5YFK · PDBe 5YFK · UniProt Q8XN25

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