MolNFT v1 · #140551 · protein

Crystal structure of ATG7CTD-ATG8-mgatp complex in form II

5YEC: “Crystal structure of ATG7CTD-ATG8-mgatp complex in form II”. X-ray diffraction, 3 ligands (ATP, ZN, MG). MolNFT v1 #140551 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YEC
Type: protein
Length: 811 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P38862, P38182
Ligands: ATP, ZN, MG

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	304	—	P38862
B	—	protein	106	—	P38182
C	—	protein	302	—	P38862
D	—	protein	99	—	P38182

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, C
ZN · Zinc ion · metal · 2 copies · chains A, C
MG · Magnesium ion · metal · 2 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YEC · Crystal structure of Atg7CTD-Atg8-MgATP complex in form II · the same entry in another collection · chain D against D, TM-score 1.00
P38862 · AlphaFold monomer V2.0 prediction for ubiquitin-like modifier- activating enzyme ATG7… · a predicted model of the same protein · chain A against A, TM-score 0.98
P38182 · AlphaFold monomer V2.0 prediction for autophagy-related protein 8 (P38182) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38862
Every structure of UniProt P38182
Elsewhere: RCSB PDB 5YEC · PDBe 5YEC · UniProt P38862 · UniProt P38182

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