MolNFT v1 · #140499 · protein
Human ppargamma ligand binding domain complexed with lobeglitazone
5YCN: “Human ppargamma ligand binding domain complexed with lobeglitazone”. X-ray diffraction, 1 ligand (8LX). MolNFT v1 #140499 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YCN
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P37231, Q15788
- Ligands
- 8LX
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 263 | — | P37231 |
| B | — | protein | 11 | — | Q15788 |
Ligands and binding sites
- 8LX · (5S)-5-[[4-[2-[[6-(4-methoxyphenoxy)pyrimidin-4-yl]-methyl-amino]ethoxy]phenyl]methyl]-1,3-thiazolidine-2, 4-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YCN · Human PPARgamma ligand binding domain complexed with Lobeglitazone · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37231
- Every structure of UniProt Q15788
- Elsewhere: RCSB PDB 5YCN · PDBe 5YCN · UniProt P37231 · UniProt Q15788
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