MolNFT v1 · #140490 · protein
Crystal structure of poecilia reticulata adenylate kinase
5YCD: “Crystal structure of poecilia reticulata adenylate kinase”. X-ray diffraction, 2 ligands (AP5, MG). MolNFT v1 #140490 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YCD
- Type
- protein
- Length
- 384 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- AP5, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 191 | — | — |
| B | — | protein | 193 | — | — |
Ligands and binding sites
- AP5 · Bis(adenosine)-5'-pentaphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YCD · Crystal structure of Poecilia reticulata adenylate kinase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YCD · PDBe 5YCD
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