MolNFT v1 · #140471 · protein

Structure of the KANK1 ankyrin domain in complex with KIF21A peptide

5YBU · Kn motif and ankyrin repeat domain-containing protein 1: “Structure of the KANK1 ankyrin domain in complex with KIF21A peptide”. X-ray diffraction. MolNFT v1 #140471 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YBU
Type: protein
Length: 263 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kn motif and ankyrin repeat domain-containing protein 1; Kinesin-like protein KIF21A
UniProt: Q14678, Q7Z4S6

Structure

x-ray diffraction · 2 distinct chains · 57% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kn motif and ankyrin repeat domain-containing protein 1	protein	248	58% helix, 1% strand	Q14678
B	Kinesin-like protein KIF21A	protein	15	53% helix, 0% strand	Q7Z4S6

Interfaces

1 interface between chains.

A–B · 934 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

5YBU · Structure of the KANK1 ankyrin domain in complex with KIF21A peptide · the same entry in another collection · chain A against A, TM-score 1.00
Q14678 · AlphaFold monomer V2.0 prediction for kn motif and ankyrin repeat domain-containing… · a predicted model of the same protein · chain A against A, TM-score 0.98
Q7Z4S6 · AlphaFold monomer V2.0 prediction for kinesin-like protein KIF21A (Q7Z4S6) · a predicted model of the same protein · chain B against A, TM-score 0.31

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q14678
Every structure of UniProt Q7Z4S6
Elsewhere: RCSB PDB 5YBU · PDBe 5YBU · UniProt Q14678 · UniProt Q7Z4S6

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