MolNFT v1 · #140465 · protein
FE(II)/(ALPHA)KETOGLUTARATE-dependent dioxygenase prha in complex with preaustinoid A1
5YBO: “FE(II)/(ALPHA)KETOGLUTARATE-dependent dioxygenase prha in complex with preaustinoid A1”. X-ray diffraction, 3 ligands (AKG, 8SX, FE). MolNFT v1 #140465 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YBO
- Type
- protein
- Length
- 579 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1E1FFL0
- Ligands
- AKG, 8SX, FE
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 294 | — | A0A1E1FFL0 |
| B | — | protein | 285 | — | A0A1E1FFL0 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · 2 copies · chains A, B
- 8SX · preaustinoid A1 · ligand · chains A, B
- FE · Fe (III) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YBO · Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA in complex with preaustinoid A1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1E1FFL0
- Elsewhere: RCSB PDB 5YBO · PDBe 5YBO · UniProt A0A1E1FFL0
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