MolNFT v1 · #140431 · protein
Deconstructing the salt-bridge network of a computationally designed collagen heterotrimer
5YAN: “Deconstructing the salt-bridge network of a computationally designed collagen heterotrimer”. X-ray diffraction. MolNFT v1 #140431 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YAN
- Type
- protein
- Length
- 183 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen
Structure
x-ray diffraction · 6 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Collagen | protein | 32 | 0% helix, 0% strand | — |
| B | Collagen | protein | 32 | 0% helix, 0% strand | — |
| C | Collagen | protein | 31 | 0% helix, 0% strand | — |
| D | Collagen | protein | 28 | 0% helix, 0% strand | — |
| E | Collagen | protein | 30 | 0% helix, 0% strand | — |
| F | Collagen | protein | 30 | 0% helix, 0% strand | — |
Interfaces
13 interfaces between chains.
- A–B · 1145 Ų buried · 18 hydrogen bonds · protein-protein
- B–C · 1013 Ų buried · 17 hydrogen bonds · protein-protein
- D–E · 1004 Ų buried · 15 hydrogen bonds · protein-protein
- A–C · 1003 Ų buried · 13 hydrogen bonds · protein-protein
- E–F · 974 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 30 modified (hydroxylation).
Compared structures
- 5YAN · Deconstructing the Salt-Bridge Network of a Computationally Designed Collagen Heterotrimer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YAN · PDBe 5YAN
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