MolNFT v1 · #140428 · protein
The crystal structure of human iyd THR239 mutant with ligand 3- fluorotyrosine (F-tyr)
5YAK: “The crystal structure of human iyd THR239 mutant with ligand 3- fluorotyrosine (F-tyr)”. X-ray diffraction, 1 ligand (FMN). MolNFT v1 #140428 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YAK
- Type
- protein
- Length
- 1,309 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6PHW0
- Ligands
- FMN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 216 | — | Q6PHW0 |
| B | — | protein | 219 | — | Q6PHW0 |
| C | — | protein | 218 | — | Q6PHW0 |
| D | — | protein | 216 | — | Q6PHW0 |
| E, F | — | protein | 220 | — | Q6PHW0 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 6 copies · chains A, F, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YAK · The crystal structure of human IYD Thr239 mutant with ligand 3-Fluorotyrosine (F-Tyr) · the same entry in another collection · chain F against F, TM-score 1.00
- Q6PHW0 · AlphaFold monomer V2.0 prediction for iodotyrosine deiodinase 1 (Q6PHW0) · a predicted model of the same protein · chain E against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6PHW0
- Elsewhere: RCSB PDB 5YAK · PDBe 5YAK · UniProt Q6PHW0
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