MolNFT v1 · #140425 · protein
Ferulic acid esterase from streptomyces cinnamoneus at 2.4 a resolution
5YAE: “Ferulic acid esterase from streptomyces cinnamoneus at 2.4 a resolution”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.61). MolNFT v1 #140425 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YAE
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Esterase
- EC
- 3.1.1.73
- UniProt
- A0A0M4UW33
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Esterase (EC 3.1.1.73) | protein | 340 | 35% helix, 25% strand | A0A0M4UW33 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.61 | 0.89 | 17 | empty |
| 2 | 139 | 0.52 | 0.80 | 23 | empty |
| 3 | 163 | 0.47 | 0.76 | 24 | empty |
| 4 | 57 | 0.28 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5YAE · Ferulic acid esterase from Streptomyces cinnamoneus at 2.4 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M4UW33
- Elsewhere: RCSB PDB 5YAE · PDBe 5YAE · UniProt A0A0M4UW33
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