MolNFT v1 · #140396 · protein
Crystal structure of salmonella safd adhesin
5Y9G · Pilin structural protein SAFD,PILUS assembly protein: “Crystal structure of salmonella safd adhesin”. X-ray diffraction, 1 pocket (best druggability 0.59). MolNFT v1 #140396 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5Y9G
- Type
- protein
- Length
- 277 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilin structural protein SAFD,PILUS assembly protein
- UniProt
- A0A1X2WLP6, A0A158MX89
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pilin structural protein SAFD,PILUS assembly protein | protein | 136 | 0% helix, 54% strand | A0A1X2WLP6, A0A158MX89 |
| B | Pilin structural protein SAFD,PILUS assembly protein | protein | 141 | 0% helix, 55% strand | A0A1X2WLP6, A0A158MX89 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 336 | 0.59 | 0.77 | 49 | empty |
Interfaces
1 interface between chains.
- A–B · 912 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5Y9G · Crystal structure of Salmonella SafD adhesin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1X2WLP6
- Every structure of UniProt A0A158MX89
- Elsewhere: RCSB PDB 5Y9G · PDBe 5Y9G · UniProt A0A1X2WLP6 · UniProt A0A158MX89
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