MolNFT v1 · #140377 · protein

Crystal structure analysis of the BRD4

5Y8W: “Crystal structure analysis of the BRD4”. X-ray diffraction, 3 ligands (8PU, NA, NO3). MolNFT v1 #140377 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Y8W
Type: protein
Length: 124 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O60885
Ligands: 8PU, NA, NO3

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	124	—	O60885

Ligands and binding sites

8PU · 5-bromanyl-2-methoxy-N-(3-methyl-6-oxidanyl-1,2-benzoxazol-5-yl)benzenesulfonamide · ligand · chains A
NA · Sodium ion · metal · chains A
NO3 · Nitrate ion · ion · chains A
EDO · 1,2-ethanediol · additive · 5 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5Y8W · Crystal Structure Analysis of the BRD4 · the same entry in another collection · chain A against A, TM-score 1.00
O60885 · AlphaFold monomer V2.0 prediction for bromodomain-containing protein 4 (O60885) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60885
Elsewhere: RCSB PDB 5Y8W · PDBe 5Y8W · UniProt O60885

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