MolNFT v1 · #140360 · protein

Crystal structure of a prokaryotic sefir domain

5Y8E · Sefir domain protein: “Crystal structure of a prokaryotic sefir domain”. X-ray diffraction, 1 pocket (best druggability 0.38). MolNFT v1 #140360 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Y8E
Type: protein
Length: 154 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sefir domain protein
UniProt: C2XMK4
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sefir domain protein	protein	154	42% helix, 16% strand	C2XMK4

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.38	0.77	19	empty

Compared structures

5Y8E · Crystal Structure of a prokaryotic SEFIR domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C2XMK4
Elsewhere: RCSB PDB 5Y8E · PDBe 5Y8E · UniProt C2XMK4

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