MolNFT v1 · #140313 · protein
Zika virus helicase in complex with ADP
5Y6N · Helicase domain from genome polyprotein: “Zika virus helicase in complex with ADP”. X-ray diffraction, 2 ligands (ADP, MN), 3 pockets (best druggability 0.84). MolNFT v1 #140313 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5Y6N
- Type
- protein
- Length
- 430 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Helicase domain from genome polyprotein
- UniProt
- A0A140GMI3
- Ligands
- ADP, MN
- Pockets
- 3 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Helicase domain from genome polyprotein | protein | 430 | 36% helix, 19% strand | A0A140GMI3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1083 | 0.84 | 0.85 | 99 | empty |
| 2 | 217 | 0.58 | 0.80 | 40 | MN, ADP |
| 3 | 74 | 0.40 | 0.79 | 23 | empty |
Compared structures
- 5Y6N · Zika virus helicase in complex with ADP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A140GMI3
- Elsewhere: RCSB PDB 5Y6N · PDBe 5Y6N · UniProt A0A140GMI3
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