MolNFT v1 · #140302 · protein

Crystal structure of zmasch S128A mutant protein from zymomonas mobilis

5Y6C · Helix-turn-helix domain-containing protein: “Crystal structure of zmasch S128A mutant protein from zymomonas mobilis”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.82). MolNFT v1 #140302 on GenesisL1: 3D…

PDB: 5Y6C
Type: protein
Length: 284 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Helix-turn-helix domain-containing protein
UniProt: A0A0H3G0N3
Ligands: CL
Pockets: 1 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Helix-turn-helix domain-containing protein	protein	142	30% helix, 36% strand	A0A0H3G0N3

Ligands and binding sites

CL · Chloride ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	996	0.82	0.83	73	CL

Interfaces

1 interface between chains.

A–B · 1017 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

5Y6C · Crystal structure of ZmASCH S128A mutant protein from Zymomonas mobilis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3G0N3
Elsewhere: RCSB PDB 5Y6C · PDBe 5Y6C · UniProt A0A0H3G0N3

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