MolNFT v1 · #140290 · protein
V/A-type ATPASE/SYNTHASE from thermus thermophilus, peripheral domain, rotational state 1
5Y5Y: “V/A-type ATPASE/SYNTHASE from thermus thermophilus, peripheral domain, rotational state 1”. Electron microscopy, 1 ligand (ADP). MolNFT v1 #140290 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y5Y
- Type
- protein
- Length
- 4,164 residues
- Chains
- 13
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q56403, Q56404, O87880, P74903, Q5SIT5, P74901, P74902
- Ligands
- ADP
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 577 | — | Q56403 |
| D, E, F | — | protein | 459 | — | Q56404 |
| G | — | protein | 210 | — | O87880 |
| H | — | protein | 100 | — | P74903 |
| I, K | — | protein | 61 | — | Q5SIT5 |
| J, L | — | protein | 152 | — | P74901 |
| M | — | protein | 320 | — | P74902 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, F, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y5Y · V/A-type ATPase/synthase from Thermus thermophilus, peripheral domain, rotational state 1 · the same entry in another collection · chain M against M, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q56403
- Every structure of UniProt Q56404
- Every structure of UniProt O87880
- Every structure of UniProt P74903
- Every structure of UniProt Q5SIT5
- Every structure of UniProt P74901
- Every structure of UniProt P74902
- Elsewhere: RCSB PDB 5Y5Y · PDBe 5Y5Y · UniProt Q56403 · UniProt Q56404 · UniProt O87880 · UniProt P74903 · UniProt Q5SIT5 · UniProt P74901 · UniProt P74902
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