MolNFT v1 · #140283 · protein
Crystal structure of a novel pyrethroid hydrolase pyth with bif
5Y5R: “Crystal structure of a novel pyrethroid hydrolase pyth with bif”. X-ray diffraction, 2 ligands (8NL, SO4). MolNFT v1 #140283 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y5R
- Type
- protein
- Length
- 1,511 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D0VUS3
- Ligands
- 8NL, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 252 | — | D0VUS3 |
| D | — | protein | 253 | — | D0VUS3 |
| E | — | protein | 251 | — | D0VUS3 |
| F | — | protein | 251 | — | D0VUS3 |
Ligands and binding sites
- 8NL · (2-methyl-3-phenyl-phenyl)methyl (1~{S})-3-[(~{E})-2-chloranyl-3,3,3-tris(fluoranyl)prop-1-enyl]-2,2-dimethyl-cyclopropane-1-carboxylate · ligand · 6 copies · chains A, B, C, D, E, F
- SO4 · Sulfate ion · ion · 6 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y5R · Crystal structure of a novel Pyrethroid Hydrolase PytH with BIF · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0VUS3
- Elsewhere: RCSB PDB 5Y5R · PDBe 5Y5R · UniProt D0VUS3
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