MolNFT v1 · #140216 · protein + DNA
Crystal structure of horse TLR9 in complex with two dnas (cpg DNA and gcgcac DNA)
5Y3K: “Crystal structure of horse TLR9 in complex with two dnas (cpg DNA and gcgcac DNA)”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #140216 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y3K
- Type
- protein + DNA
- Length
- 1,532 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2EEY0
- Ligands
- NAG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 750 | — | Q2EEY0 |
| C, D | — | dna | 10 | — | — |
| E, F | — | dna | 6 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 19 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y3K · Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and GCGCAC DNA) · the same entry in another collection · chain E against E, TM-score 1.00
- Q2EEY0 · AlphaFold monomer V2.0 prediction for toll-like receptor 9 (Q2EEY0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2EEY0
- Elsewhere: RCSB PDB 5Y3K · PDBe 5Y3K · UniProt Q2EEY0
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