MolNFT v1 · #14021 · protein
The structure of phosphorylated beta-phosphoglucomutase from lactoccocus lactis to 2.3 ångström resolution
1LVH: “The structure of phosphorylated beta-phosphoglucomutase from lactoccocus lactis to 2.3 ångström resolution”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.66). MolNFT v1 #14021 on GenesisL1: 3D structure, binding…
- PDB
- 1LVH
- Type
- protein
- Length
- 442 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-phosphoglucomutase
- EC
- 5.4.2.6
- UniProt
- P71447
- Ligands
- MG
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Beta-phosphoglucomutase (EC 5.4.2.6) | protein | 221 | 51% helix, 11% strand | P71447 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 471 | 0.66 | 0.78 | 39 | empty |
| 2 | 379 | 0.62 | 0.78 | 34 | empty |
Modifications
Observed in the structure: 2 modified (phosphorylation).
Compared structures
- 1LVH · The Structure of Phosphorylated beta-phosphoglucomutase from Lactoccocus lactis to 2.3… · the same entry in another collection · chain A against A, TM-score 1.00
- P71447 · AlphaFold monomer V2.0 prediction for beta-phosphoglucomutase (P71447) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71447
- Elsewhere: RCSB PDB 1LVH · PDBe 1LVH · UniProt P71447
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