MolNFT v1 · #140201 · protein
Crystal structure of ptp delta IG1-IG2 in complex with IL1RAPL1
5Y32: “Crystal structure of ptp delta IG1-IG2 in complex with IL1RAPL1”. X-ray diffraction, 3 ligands (NAG, FUC, BMA). MolNFT v1 #140201 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y32
- Type
- protein
- Length
- 531 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P59823, Q64487
- Ligands
- NAG, FUC, BMA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 322 | — | P59823 |
| A | — | protein | 209 | — | Q64487 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains B
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains B
- BMA · beta-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y32 · Crystal structure of PTP delta Ig1-Ig2 in complex with IL1RAPL1 · the same entry in another collection · chain B against B, TM-score 1.00
- Q64487 · AlphaFold monomer V2.0 prediction for receptor-type tyrosine-protein phosphatase delta… · a predicted model of the same protein · chain A against A, TM-score 0.98
- P59823 · AlphaFold monomer V2.0 prediction for interleukin-1 receptor accessory protein-like 1… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59823
- Every structure of UniProt Q64487
- Elsewhere: RCSB PDB 5Y32 · PDBe 5Y32 · UniProt P59823 · UniProt Q64487
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