MolNFT v1 · #140180 · protein
Structure of mbp tagged gbs camp
5Y2G · Maltose-binding periplasmic PROTEIN,PROTEIN B: “Structure of mbp tagged gbs camp”. X-ray diffraction, 2 ligands (GLC, SO4), 5 pockets (best druggability 0.79). MolNFT v1 #140180 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5Y2G
- Type
- protein
- Length
- 581 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding periplasmic PROTEIN,PROTEIN B
- UniProt
- P0AEX9, P09879
- Ligands
- GLC, SO4
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding periplasmic PROTEIN,PROTEIN B | protein | 581 | 54% helix, 11% strand | P0AEX9, P09879 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 795 | 0.79 | 0.83 | 60 | GLC |
| 2 | 190 | 0.56 | 0.80 | 28 | empty |
| 3 | 195 | 0.55 | 0.79 | 26 | empty |
| 4 | 72 | 0.29 | 0.73 | 15 | empty |
| 5 | 55 | 0.28 | 0.74 | 11 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt P09879
- Elsewhere: RCSB PDB 5Y2G · PDBe 5Y2G · UniProt P0AEX9 · UniProt P09879
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