MolNFT v1 · #140178 · protein

Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain ncdv

5Y2E · Non-structural glycoprotein 4: “Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain ncdv”. X-ray diffraction. MolNFT v1 #140178 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Y2E
Type: protein
Length: 182 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Non-structural glycoprotein 4
UniProt: P08434

Structure

x-ray diffraction · 4 distinct chains · 94% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D	Non-structural glycoprotein 4	protein	46	96% helix, 0% strand	P08434
A	Non-structural glycoprotein 4	protein	45	96% helix, 0% strand	P08434
C	Non-structural glycoprotein 4	protein	47	91% helix, 0% strand	P08434
B	Non-structural glycoprotein 4	protein	44	93% helix, 0% strand	P08434

Interfaces

6 interfaces between chains.

A–C · 1096 Å² buried · 8 hydrogen bonds · protein-protein
C–B · 1051 Å² buried · 5 hydrogen bonds · protein-protein
D–B · 1017 Å² buried · 4 hydrogen bonds · protein-protein
D–A · 1017 Å² buried · 4 hydrogen bonds · protein-protein
A–B · 234 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5Y2E · Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain NCDV · the same entry in another collection · chain D against D, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08434
Elsewhere: RCSB PDB 5Y2E · PDBe 5Y2E · UniProt P08434

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