MolNFT v1 · #140171 · protein
Crystal structure of se-met DPB4-DPB3
5Y27: “Crystal structure of se-met DPB4-DPB3”. X-ray diffraction. MolNFT v1 #140171 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y27
- Type
- protein
- Length
- 190 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P87174, C6Y4D0
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 98 | — | P87174 |
| B | — | protein | 92 | — | C6Y4D0 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y27 · Crystal structure of Se-Met Dpb4-Dpb3 · the same entry in another collection · chain A against A, TM-score 1.00
- P87174 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit D (P87174) · a predicted model of the same protein · chain A against A, TM-score 0.97
- C6Y4D0 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit C (C6Y4D0) · a predicted model of the same protein · chain B against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P87174
- Every structure of UniProt C6Y4D0
- Elsewhere: RCSB PDB 5Y27 · PDBe 5Y27 · UniProt P87174 · UniProt C6Y4D0
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