MolNFT v1 · #140163 · protein
Crystal structure of ZMYND8 phd-bromo-pwwp tandem in complex with drebrin adf-H domain
5Y1Z: “Crystal structure of ZMYND8 phd-bromo-pwwp tandem in complex with drebrin adf-H domain”. X-ray diffraction, 2 ligands (ZN, SO4). MolNFT v1 #140163 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y1Z
- Type
- protein
- Length
- 874 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q16643, Q9ULU4
- Ligands
- ZN, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 130 | — | Q16643 |
| B | — | protein | 135 | — | Q16643 |
| C | — | protein | 302 | — | Q9ULU4 |
| D | — | protein | 307 | — | Q9ULU4 |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains C, D
- SO4 · Sulfate ion · ion · 6 copies · chains A, C, D
- GOL · Glycerol · additive · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y1Z · Crystal structure of ZMYND8 PHD-BROMO-PWWP tandem in complex with Drebrin ADF-H domain · the same entry in another collection · chain D against D, TM-score 1.00
- Q16643 · AlphaFold monomer V2.0 prediction for drebrin (Q16643) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q9ULU4 · AlphaFold monomer V2.0 prediction for protein kinase C-binding protein 1 (Q9ULU4) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16643
- Every structure of UniProt Q9ULU4
- Elsewhere: RCSB PDB 5Y1Z · PDBe 5Y1Z · UniProt Q16643 · UniProt Q9ULU4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.