MolNFT v1 · #140149 · protein

Monomeric L-threonine 3-dehydrogenase from metagenome database (akb and NADH bound form)

5Y1G · NAD dependent EPIMERASE/DEHYDRATASE family: “Monomeric L-threonine 3-dehydrogenase from metagenome database (akb and NADH bound form)”. X-ray diffraction, 2 ligands (AKB, NAD), 1 pocket (best druggability 0.76). MolNFT v1 #140149 on…

PDB: 5Y1G
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NAD dependent EPIMERASE/DEHYDRATASE family
UniProt: D6PBM7
Ligands: AKB, NAD
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NAD dependent EPIMERASE/DEHYDRATASE family	protein	310	45% helix, 16% strand	D6PBM7

Ligands and binding sites

AKB · 2-amino-3-ketobutyric acid · ligand · chains A
NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	392	0.76	0.86	46	AKB, NAD

Compared structures

5Y1G · Monomeric L-threonine 3-dehydrogenase from metagenome database (AKB and NADH bound form) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6PBM7
Elsewhere: RCSB PDB 5Y1G · PDBe 5Y1G · UniProt D6PBM7

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